Bioconductor GAGE package

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gage gage package pathview rna-seq

updated 2.2 years ago by Helen • 0 • written 6.2 years ago by tarun2 • 0

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2.8k

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gage package error

updated 6.0 years ago by James W. MacDonald 65k • written 6.0 years ago by Miskey, Csaba ▴ 20

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1.7k

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kegg geneset genelist gage package

updated 6.7 years ago by Gordon Smyth 50k • written 6.7 years ago by sup230 ▴ 30

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1.6k

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gage gage package

updated 7.5 years ago by Luo Weijun ★ 1.6k • written 7.6 years ago by Michael • 0

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1.5k

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gage package deseq2

6.8 years ago sup230 ▴ 30

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1.4k

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R gage package rnaseq pathview

7.7 years ago joanito.liberti • 0

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gage gage package gene expression matrix gene set analysis

5.8 years ago atakanekiz ▴ 30

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936

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gage package path.ids RNA-Seq

7.8 years ago rl1385 • 0

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914

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t-test GAGE package Kolmogorov-Smirnov test Gene-Set enrichment

7.8 years ago smt8n • 0

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899

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gage package gage

5.8 years ago melkile26 • 0

10 results • Page 1 of 1

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Comment: EGSEA usage with microarray data (with vooma)? by Chris • 0

Hi Pekka, I also try EGSEA with microarray data. However, I got this error. Would you please have a suggestion? gsa = egsea.ma(numeric…

Comment: How to use bootRanges to bootstrap small RNA loci (nullranges package) by Michael Love 42k

> Any suggestions for methylation data segmentation? I think the same segmentation can be used.

Comment: deseq2 results by swbarnes2 ★ 1.3k

Cross-posted https://www.biostars.org/p/9594331/#9594458

Answer: Mac ARM64 build report for BioC 3.19 from 'kjohnson3' reporting ERROR which it by Mike Smith ★ 6.5k

The other answers here are all good and demonstrate the issue with floating point comparisons nicely. I'd like to add that your particular…

Comment: More regions in union when increasing DBA$config$mergeOverlap by Ian D. ▴ 70

Nudging my question. I could do with confirmation before proceeding with my current projects. Thank you.

Votes

A: Volcanoplot with limma - RAW P-values or Adj.P-Values

Answer: Mac ARM64 build report for BioC 3.19 from 'kjohnson3' reporting ERROR which it

Comment: Mac ARM64 build report for BioC 3.19 from 'kjohnson3' reporting ERROR which it

Answer: minfi latest update for EPIC V2 chip

A: Error in DESeqDataSet : some values in assay are not integers

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Teacher to Michael Love 42k